RNA-Seq analysis of Gossypium barbadense inoculated with Verticillium... - SRA

SRX426307: RNA-Seq analysis of Gossypium barbadense inoculated with Verticillium dahliae for 72 hours.
1 ILLUMINA (Illumina HiSeq 2000) run: 66.1M spots, 3.2G bases, 2.8Gb downloads

Design: Verticillium wilt, caused by the fungal pathogen Verticillium dahliae, is the most severe disease in cotton (Gossypium spp.), causing great lint losses worldwide.The objective of this study is to investigate the transcriptional profile in resistance cotton G. barbadense inoculated with V. dahliae. The infection samples at 2, 6, 12, 24, 48, and 72 hours, and one mock-inoculated sample were collected for the high throughput sequencing.about 200 million clean reads for each sample were generated with the quality control (Q≥20).

Submitted by: BGI

Study: Gossypium barbadense Transcriptome or Gene expression

PRJNA234454 • SRP035371 • All experiments • All runs

show Abstracthide Abstract

Verticillium wilt, caused by the fungal pathogen Verticillium dahliae, is the most severe disease in cotton (Gossypium spp.), causing great lint losses worldwide.The objective of this study is to investigate the transcriptional profile in resistance cotton G. barbadense inoculated with V. dahliae. The infection samples at 2, 6, 12, 24, 48, and 72 hours, and one mock-inoculated sample were collected for the high throughput sequencing.about 200 million clean reads for each sample were generated with the quality control (Q=20).

Sample:

SAMN02580703 • SRS529856 • All experiments • All runs

Organism: Gossypium barbadense

Library:

Name: IC-72-2

Instrument: Illumina HiSeq 2000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: RT-PCR

Layout: SINGLE

Spot descriptor:

1 forward

Runs: 1 run, 66.1M spots, 3.2G bases, 2.8Gb

Run	# of Spots	# of Bases	Size	Published
SRR1107776	66,139,484	3.2G	2.8Gb	2015-07-22

ID:: 602930

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Recent activity